compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• uk.ac.ebi.ep:ep-web-client:war:1.0.12

  EP website
  Description: The Enzyme Portal web application. URL: http://enzymeportal.sf.net/ep-web-client Project License: No project license is defined for this project.

  • junit:junit:jar:4.10 (test)

    JUnit
    Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

    • org.hamcrest:hamcrest-core:jar:1.1 (test)

      Hamcrest Core
      Description: There is currently no description associated with this project. Project License: BSD style

  • org.springframework:spring-context:jar:3.0.5.RELEASE (compile)

    spring-context
    Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-aop:jar:3.0.5.RELEASE (compile)

      spring-aop
      Description: Spring Framework Parent Project License: No project license is defined for this project.

      • aopalliance:aopalliance:jar:1.0 (compile)

        AOP alliance
        Description: AOP Alliance URL: http://aopalliance.sourceforge.net Project License: Public Domain

      • org.springframework:spring-asm:jar:3.0.5.RELEASE (compile)

        spring-asm
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-beans:jar:3.0.5.RELEASE (compile)

        spring-beans
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

        spring-core
        Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-beans:jar:3.0.5.RELEASE (compile)

      spring-beans
      Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

        spring-core
        Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

      spring-core
      Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-asm:jar:3.0.5.RELEASE (compile)

        spring-asm
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • commons-logging:commons-logging:jar:1.1.1 (compile)

        Commons Logging
        Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://commons.apache.org/logging Project License: The Apache Software License, Version 2.0

    • org.springframework:spring-expression:jar:3.0.5.RELEASE (compile)

      spring-expression
      Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

        spring-core
        Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-asm:jar:3.0.5.RELEASE (compile)

      spring-asm
      Description: Spring Framework Parent Project License: No project license is defined for this project.

  • org.springframework:spring-webmvc:jar:3.0.5.RELEASE (compile)

    spring-webmvc
    Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-asm:jar:3.0.5.RELEASE (compile)

      spring-asm
      Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-beans:jar:3.0.5.RELEASE (compile)

      spring-beans
      Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-context:jar:3.0.5.RELEASE (compile)

      spring-context
      Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-context-support:jar:3.0.5.RELEASE (compile)

      spring-context-support
      Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-beans:jar:3.0.5.RELEASE (compile)

        spring-beans
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-context:jar:3.0.5.RELEASE (compile)

        spring-context
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

        spring-core
        Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

      spring-core
      Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-expression:jar:3.0.5.RELEASE (compile)

      spring-expression
      Description: Spring Framework Parent Project License: No project license is defined for this project.

    • org.springframework:spring-web:jar:3.0.5.RELEASE (compile)

      spring-web
      Description: Spring Framework Parent Project License: No project license is defined for this project.

      • aopalliance:aopalliance:jar:1.0 (compile)

        AOP alliance
        Description: AOP Alliance URL: http://aopalliance.sourceforge.net Project License: Public Domain

      • org.springframework:spring-beans:jar:3.0.5.RELEASE (compile)

        spring-beans
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-context:jar:3.0.5.RELEASE (compile)

        spring-context
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

        spring-core
        Description: Spring Framework Parent Project License: No project license is defined for this project.

  • javax.servlet:jstl:jar:1.2 (compile)

    jstl
    Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

  • uk.ac.ebi.ep:ep-core:jar:1.0.9 (compile)

    EP core
    Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/ep-core Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:rhea-adapter:jar:1.0.2 (compile)

      Rhea adapter
      Description: Module providing proxies to Rhea reactions. URL: http://maven.apache.org Project License: No project license is defined for this project.

      • uk.ac.ebi.rhea:rhea-ws-domain:jar:1.0.2 (compile)

        RheaWsDomain
        Description: There is currently no description associated with this project. URL: http://rhea-ebi.sf.net/rhea-ws-domain Project License: Creative Commons Attribution (CC BY) 3.0

      • uk.ac.ebi.rhea:rhea-ws-client:jar:1.0 (compile)

        RheaWsClient
        Description: There is currently no description associated with this project. URL: http://rhea-ebi.sf.net/rhea-ws-client Project License: No project license is defined for this project.

      • uk.ac.ebi.rhea:rhea-domain:jar:1.7.0 (compile)

        Domain model
        Description: There is currently no description associated with this project. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

    • uk.ac.ebi.ep:biomart-adapter:jar:1.0.2 (compile)

      biomart-adapter
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/biomart-adapter Project License: No project license is defined for this project.

      • uk.ac.ebi.ep:ep-util:jar:1.0.3 (compile)

        EP utilities
        Description: Some common utility classes for the Enzyme Portal. URL: http://enzymeportal.sf.net/ep-util Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:uniprot-adapter:jar:1.0.1 (compile)

      uniprot-adapter
      Description: There is currently no description associated with this project. URL: http://maven.apache.org Project License: No project license is defined for this project.

      • uk.ac.ebi.uniprot.kraken:uniprotjapi:jar:2012.10 (compile)

        uniprotjapi
        Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:intenz-adapter:jar:1.0.5 (compile)

      IntEnz adapter
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/intenz-adapter Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:ep-util:jar:1.0.3 (compile)

      EP utilities
      Description: Some common utility classes for the Enzyme Portal. URL: http://enzymeportal.sf.net/ep-util Project License: No project license is defined for this project.

    • log4j:log4j:jar:1.2.17 (compile)

      Apache Log4j
      Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

    • javax.xml:jaxrpc-api:jar:1.1 (compile)

      Java API for XML Based RPC
      Description: Part of the Java Web Services Developer Pack 1.6 URL: http://java.sun.com/webservices/jaxrpc/index.jsp Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:ebeye-adapter:jar:1.0.2 (compile)

      EB-Eye adapter
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/ebeye-adapter Project License: No project license is defined for this project.

      • uk.ac.ebi.biobabel:ebeye-client:jar:2.0.0 (compile)

        EB-Eye client
        Description: A (SOAP) web services client for the EB-Eye search engine. URL: http://intenz.sf.net/biobabel/ebeye-client Project License: No project license is defined for this project.

      • uk.ac.ebi.ep:ep-util:jar:1.0.3 (compile)

        EP utilities
        Description: Some common utility classes for the Enzyme Portal. URL: http://enzymeportal.sf.net/ep-util Project License: No project license is defined for this project.

      • log4j:log4j:jar:1.2.17 (compile)

        Apache Log4j
        Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.biobabel:ebeye-client:jar:2.0.0 (compile)

      EB-Eye client
      Description: A (SOAP) web services client for the EB-Eye search engine. URL: http://intenz.sf.net/biobabel/ebeye-client Project License: No project license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile)

      Lucene module
      Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No project license is defined for this project.

    • uk.ac.ebi.rhea:rhea-ws-client:jar:1.0 (compile)

      RheaWsClient
      Description: There is currently no description associated with this project. URL: http://rhea-ebi.sf.net/rhea-ws-client Project License: No project license is defined for this project.

      • com.sun.jersey:jersey-client:jar:1.4 (compile)

        jersey-client
        Description: Jersey is the open source (under dual CDDL+GPL license) JAX-RS (JSR 311) production quality Reference Implementation for building RESTful Web services. URL: https://jersey.dev.java.net/jersey-client/ Project License: CDDL 1.1GPL2 w/ CPE

        • com.sun.jersey:jersey-core:jar:1.4 (compile)

          jersey-core
          Description: Jersey is the open source (under dual CDDL+GPL license) JAX-RS (JSR 311) production quality Reference Implementation for building RESTful Web services. URL: https://jersey.dev.java.net/jersey-core/ Project License: CDDL 1.1GPL2 w/ CPE

    • uk.ac.ebi.rhea:rhea-domain:jar:1.7.0 (compile)

      Domain model
      Description: There is currently no description associated with this project. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

      • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

        Core Utility Modules
        Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No project license is defined for this project.

      • commons-lang:commons-lang:jar:2.5 (compile)

        Commons Lang
        Description: Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: http://commons.apache.org/lang/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.xchars:xchars:jar:1.2.6 (compile)

      XChars Java package
      Description: Java package for Special Characters handling. URL: http://intenz.sf.net/xchars/core Project License: No project license is defined for this project.

    • uk.ac.ebi.xchars:xchars-config:jar:1.0.3 (compile)

      XChars configuration
      Description: Allows encoding/decoding of Special Characters. URL: http://intenz.sf.net/xchars/config Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:reactome-adapter:jar:1.0.2 (compile)

      Reactome adapter
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/reactome-adapter Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:ep-domain:jar:1.0.4 (compile)

      EnzymePortalDomain
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/ep-domain Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:chebi-adapter:jar:1.0.2 (compile)

      chebi-adapter
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/chebi-adapter Project License: No project license is defined for this project.

      • uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0 (compile)

        ChEBI Public Web Services Client
        Description: The public Web Services client mostly auto-generated from JAX-WS. Project License: No project license is defined for this project.

        • com.sun.xml.messaging.saaj:saaj-impl:jar:1.3.2 (compile)

          saaj-impl
          Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

          • javax.xml.soap:saaj-api:jar:1.3 (compile)

            SOAP with Attachments API Package
            Description: There is currently no description associated with this project. URL: http://java.sun.com/webservices/saaj/index.jsp Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

      • uk.ac.ebi.ep:ep-util:jar:1.0.3 (compile)

        EP utilities
        Description: Some common utility classes for the Enzyme Portal. URL: http://enzymeportal.sf.net/ep-util Project License: No project license is defined for this project.

      • commons-pool:commons-pool:jar:1.6 (compile)

        Commons Pool
        Description: Commons Object Pooling Library URL: http://commons.apache.org/pool/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.ep:literature-adapter:jar:1.0.5 (compile)

      Literature adapter
      Description: A module to retrieve bibliography on enzymes from different sources. URL: http://enzymeportal.sf.net/literature-adapter Project License: No project license is defined for this project.

    • uk.ac.ebi.ep:mega-mapper:jar:1.0.8 (compile)

      Mega mapper
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/mega-mapper Project License: No project license is defined for this project.

      • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile)

        Database utilities
        Description: A module with database utilities. URL: http://intenz.sf.net/biobabel/biobabel-db Project License: No project license is defined for this project.

        • org.antlr:antlr:jar:3.0.1 (compile)

          AntLR Parser Generator
          Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://antlr.org/ Project License: BSD licence

          • org.antlr:stringtemplate:jar:3.1-b1 (compile)

            StringTemplate Template Engine
            Description: StringTemplate is a java template engine (with ports for C# and Python) for generating source code, web pages, emails, or any other formatted text output. URL: http://www.stringtemplate.org Project License: BSD licence

      • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

        Core Utility Modules
        Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No project license is defined for this project.

      • uk.ac.ebi.biobabel:ebeye-client:jar:2.0.0 (compile)

        EB-Eye client
        Description: A (SOAP) web services client for the EB-Eye search engine. URL: http://intenz.sf.net/biobabel/ebeye-client Project License: No project license is defined for this project.

      • org.apache.lucene:lucene-core:jar:3.0.2 (compile)

        Lucene Core
        Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-core Project License: Apache 2

      • org.hibernate:hibernate-core:jar:3.6.8.Final (compile)

        Hibernate Core
        Description: The core functionality of Hibernate URL: http://hibernate.org/hibernate-core Project License: GNU Lesser General Public License

        • antlr:antlr:jar:2.7.6 (compile)

          AntLR
          Description: There is currently no description associated with this project. URL: http://www.antlr.org/ Project License: No project license is defined for this project.

        • dom4j:dom4j:jar:1.6.1 (compile)

          dom4j
          Description: dom4j: the flexible XML framework for Java URL: http://dom4j.org Project License: No project license is defined for this project.

        • org.hibernate:hibernate-commons-annotations:jar:3.2.0.Final (compile)

          Hibernate Commons Annotations
          Description: Common reflection code used in support of annotation processing URL: http://hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

        • org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.1.Final (compile)

          JPA 2.0 API
          Description: Hibernate definition of the Java Persistence 2.0 (JSR 317) API. URL: http://hibernate.org Project License:

        • org.slf4j:slf4j-api:jar:1.6.1 (compile)

          SLF4J API Module
          Description: The slf4j API URL: http://www.slf4j.org Project License: MIT License

      • org.hibernate:hibernate-tools:jar:3.2.4.GA (compile)

        Hibernate Tools
        Description: Forward- and reverse-engineering tools for Eclipse and Ant. URL: http://tools.hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

        • org.beanshell:bsh:jar:2.0b4 (compile)

          BeanShell
          Description: BeanShell Project License: GNU LESSER GENERAL PUBLIC LICENSE

        • freemarker:freemarker:jar:2.3.8 (compile)

          freemarker
          Description: FreeMarker is a "template engine"; a generic tool to generate text output based on templates. URL: http://freemarker.org/ Project License: BSD-style license

        • org.hibernate:jtidy:jar:r8-20060801 (compile)

          JTidy
          Description: JTidy is a Java port of HTML Tidy, a HTML syntax checker and pretty printer. Like its non-Java cousin, JTidy can be used as a tool for cleaning up malformed and faulty HTML. In addition, JTidy provides a DOM parser for real-world HTML. URL: http://jtidy.sourceforge.net Project License: Java HTML Tidy License

      • log4j:log4j:jar:1.2.17 (compile)

        Apache Log4j
        Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

      • com.oracle:ojdbc5:jar:11.1.0.7.0 (compile)

        ojdbc5
        Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

      • uk.ac.ebi.ep:ep-domain:jar:1.0.4 (compile)

        EnzymePortalDomain
        Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/ep-domain Project License: No project license is defined for this project.

      • uk.ac.ebi.ep:bioportal-adapter:jar:1.0.2 (compile)

        bioportal-adapter
        Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://maven.apache.org Project License: No project license is defined for this project.

      • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile)

        Lucene module
        Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No project license is defined for this project.

      • org.hibernate:hibernate:jar:3.2.5.ga (compile)

        Hibernate
        Description: Relational Persistence for Java URL: http://www.hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

        • net.sf.ehcache:ehcache:jar:1.2.3 (compile)

          ehcache

          Description: ehcache is a pure Java, in-process cache with the following features: 1. Fast. 2. Simple. 3. Multiple eviction policies: LRU, LFU and FIFO. 4. Caches can be in memory or on disk. 5. Disk Stores can be persistent between VM restarts. 6. Distributed caching using multicast and RMI, with a pluggable API. 7. Cache and CacheManager listeners 8. Supports multiple Caches per CacheManager, and multiple CacheManagers per application. 9. Acts as a pluggable cache for Hibernate 3.1, 3 and 2.1. 10. Small foot print. Both in terms of size and memory requirements. 11. Minimal dependencies apart from J2SE. 12. Fully documented. See the online Documentation and the online JavaDoc. 13. Comprehensive Test Coverage. See the clover test report. 14. Available under the Apache 1.1 license. EHCache's copyright and licensing has been reviewed and approved by the Apache Software Foundation, making EHCache suitable for use in Apache projects. 15. Production tested. EHCache is used on a large and very busy eCommerce site. 16. Web caching, pull-through caches and other common caching implementations are provided in the ehcache-constructs module. URL: http://ehcache.sf.net Project License: The Apache Software License, Version 2.0

        • javax.transaction:jta:jar:1.0.1B (compile)

          Java Transaction API
          Description: The javax.transaction package. It is appropriate for inclusion in a classpath, and may be added to a Java 2 installation. URL: http://java.sun.com/products/jta Project License: No project license is defined for this project.

        • asm:asm-attrs:jar:1.5.3 (compile)

          asm-attrs
          Description: There is currently no description associated with this project. URL: http://asm.objectweb.org/ Project License: No project license is defined for this project.

        • dom4j:dom4j:jar:1.6.1 (compile)

          dom4j
          Description: dom4j: the flexible XML framework for Java URL: http://dom4j.org Project License: No project license is defined for this project.

        • antlr:antlr:jar:2.7.6 (compile)

          AntLR
          Description: There is currently no description associated with this project. URL: http://www.antlr.org/ Project License: No project license is defined for this project.

        • cglib:cglib:jar:2.1_3 (compile)

          cglib
          Description: There is currently no description associated with this project. URL: http://cglib.sourceforge.net/ Project License: No project license is defined for this project.

          • asm:asm:jar:1.5.3 (compile)

            asm
            Description: There is currently no description associated with this project. URL: http://asm.objectweb.org/ Project License: No project license is defined for this project.

        • asm:asm:jar:1.5.3 (compile)

          asm
          Description: There is currently no description associated with this project. URL: http://asm.objectweb.org/ Project License: No project license is defined for this project.

      • org.hibernate:hibernate-entitymanager:jar:3.3.2.GA (compile)

        Hibernate Entitity Manager
        Description: Hibernate Entitity Manager URL: http://hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

        • org.hibernate:hibernate-annotations:jar:3.3.1.GA (compile)

          Hibernate Annotations
          Description: Annotations metadata for Hibernate URL: http://annotations.hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

          • org.hibernate:ejb3-persistence:jar:1.0.1.GA (compile)

            Java Persistence API
            Description: Java Persistence API URL: http://www.hibernate.org Project License: No project license is defined for this project.

        • org.hibernate:ejb3-persistence:jar:1.0.1.GA (compile)

          Java Persistence API
          Description: Java Persistence API URL: http://www.hibernate.org Project License: No project license is defined for this project.

        • javassist:javassist:jar:3.4.GA (compile)

          Javassist
          Description: Simple Java bytecode manipulation URL: http://www.jboss.org/products/javassist Project License: lgpl

      • javax.sql:jdbc-stdext:jar:2.0 (compile)

        JDBC 2.0 Optional Package
        Description: JDBC 2.0 Optional Package URL: http://java.sun.com/products/jdbc/index.jsp Project License: No project license is defined for this project.

      • javax.transaction:jta:jar:1.0.1B (compile)

        Java Transaction API
        Description: The javax.transaction package. It is appropriate for inclusion in a classpath, and may be added to a Java 2 installation. URL: http://java.sun.com/products/jta Project License: No project license is defined for this project.

    • commons-collections:commons-collections:jar:3.2.1 (compile)

      Commons Collections
      Description: Types that extend and augment the Java Collections Framework. URL: http://commons.apache.org/collections/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.ep:bioportal-adapter:jar:1.0.2 (compile)

      bioportal-adapter
      Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://maven.apache.org Project License: No project license is defined for this project.

      • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

        Core Utility Modules
        Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No project license is defined for this project.

  • uk.ac.ebi.ep:reactome-adapter:jar:1.0.2 (compile)

    Reactome adapter
    Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/reactome-adapter Project License: No project license is defined for this project.

    • uk.ac.ebi.rhea:rhea-domain:jar:1.7.0 (compile)

      Domain model
      Description: There is currently no description associated with this project. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

    • org.reactome:reactome-ws:jar:20110818 (compile)

      reactome-ws
      Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

    • org.reactome:reactome-client:jar:20110818 (compile)

      reactome-client
      Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

      Core Utility Modules
      Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No project license is defined for this project.

  • uk.ac.ebi.ep:ep-util:jar:1.0.3 (compile)

    EP utilities
    Description: Some common utility classes for the Enzyme Portal. URL: http://enzymeportal.sf.net/ep-util Project License: No project license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile)

      Lucene module
      Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No project license is defined for this project.

    • org.apache.lucene:lucene-analyzers:jar:3.1.0 (compile)

      Lucene Common Analyzers
      Description: Additional Analyzers URL: http://lucene.apache.org/java/lucene-parent/lucene-analyzers Project License: Apache 2

    • uk.ac.ebi.biobabel:ebeye-client:jar:2.0.0 (compile)

      EB-Eye client
      Description: A (SOAP) web services client for the EB-Eye search engine. URL: http://intenz.sf.net/biobabel/ebeye-client Project License: No project license is defined for this project.

  • uk.ac.ebi.ep:intenz-adapter:jar:1.0.5 (compile)

    IntEnz adapter
    Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/intenz-adapter Project License: No project license is defined for this project.

    • uk.ac.ebi.intenz:intenz-xml:jar:1.0.4 (compile)

      IntEnzXML
      Description: XML format for IntEnz. URL: http://intenz.sf.net/intenz-xml Project License: No project license is defined for this project.

    • log4j:log4j:jar:1.2.17 (compile)

      Apache Log4j
      Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.ep:ep-util:jar:1.0.3 (compile)

      EP utilities
      Description: Some common utility classes for the Enzyme Portal. URL: http://enzymeportal.sf.net/ep-util Project License: No project license is defined for this project.

    • uk.ac.ebi.rhea:rhea-domain:jar:1.7.0 (compile)

      Domain model
      Description: There is currently no description associated with this project. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

    • junit:junit:jar:4.10 (compile)

      JUnit
      Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

  • uk.ac.ebi.ep:literature-adapter:jar:1.0.5 (compile)

    Literature adapter
    Description: A module to retrieve bibliography on enzymes from different sources. URL: http://enzymeportal.sf.net/literature-adapter Project License: No project license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1 (compile)

      Citations utilities
      Description: A module to handle citations from CiteXplore. URL: http://intenz.sf.net/biobabel/biobabel-citations Project License: No project license is defined for this project.

    • uk.ac.ebi.uniprot.kraken:uniprotjapi:jar:2012.10 (compile)

      uniprotjapi
      Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

      • org.springframework:spring-aop:jar:3.0.5.RELEASE (compile)

        spring-aop
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-beans:jar:3.0.5.RELEASE (compile)

        spring-beans
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-context:jar:3.0.5.RELEASE (compile)

        spring-context
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-core:jar:3.0.5.RELEASE (compile)

        spring-core
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • org.springframework:spring-web:jar:3.0.5.RELEASE (compile)

        spring-web
        Description: Spring Framework Parent Project License: No project license is defined for this project.

      • commons-codec:commons-codec:jar:1.3 (compile)

        Codec
        Description: The codec package contains simple encoder and decoders for various formats such as Base64 and Hexadecimal. In addition to these widely used encoders and decoders, the codec package also maintains a collection of phonetic encoding utilities. URL: http://jakarta.apache.org/commons/codec/ Project License: The Apache Software License, Version 2.0

      • commons-httpclient:commons-httpclient:jar:3.0.1 (compile)

        HttpClient
        Description: The HttpClient component supports the client-side of RFC 1945 (HTTP/1.0) and RFC 2616 (HTTP/1.1) , several related specifications (RFC 2109 (Cookies) , RFC 2617 (HTTP Authentication) , etc.), and provides a framework by which new request types (methods) or HTTP extensions can be created easily. URL: http://jakarta.apache.org/commons/httpclient/ Project License: Apache License

      • aopalliance:aopalliance:jar:1.0 (compile)

        AOP alliance
        Description: AOP Alliance URL: http://aopalliance.sourceforge.net Project License: Public Domain

    • commons-pool:commons-pool:jar:1.6 (compile)

      Commons Pool
      Description: Commons Object Pooling Library URL: http://commons.apache.org/pool/ Project License: The Apache Software License, Version 2.0

    • log4j:log4j:jar:1.2.17 (compile)

      Apache Log4j
      Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.ep:das-adapter:jar:1.0.3 (compile)

    das-adapter
    Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://maven.apache.org Project License: No project license is defined for this project.

    • uk.ac.ebi.das:jdas:jar:1.0.3 (compile)

      JDAS - JAXB DAS Client Library
      Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

    • commons-pool:commons-pool:jar:1.6 (compile)

      Commons Pool
      Description: Commons Object Pooling Library URL: http://commons.apache.org/pool/ Project License: The Apache Software License, Version 2.0

    • log4j:log4j:jar:1.2.17 (compile)

      Apache Log4j
      Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2 (compile)

    XChars tag library
    Description: Tag library to make special characters transformations from JSPs. URL: http://intenz.sf.net/xchars/taglib Project License: No project license is defined for this project.

  • uk.ac.ebi.xchars:xchars-config:jar:1.0.3 (compile)

    XChars configuration
    Description: Allows encoding/decoding of Special Characters. URL: http://intenz.sf.net/xchars/config Project License: No project license is defined for this project.

  • javax.servlet:servlet-api:jar:2.5 (provided)

    servlet-api
    Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

  • javax.servlet.jsp:jsp-api:jar:2.2 (provided)

    JavaServer Pages(TM) API
    Description: There is currently no description associated with this project. URL: https://jsp.dev.java.net/jsp-api Project License: CDDL + GPLv2 with classpath exception

  • org.apache.lucene:lucene-core:jar:3.0.2 (compile)

    Lucene Core
    Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-core Project License: Apache 2

  • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

    Core Utility Modules
    Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No project license is defined for this project.

    • commons-collections:commons-collections:jar:3.2.1 (compile)

      Commons Collections
      Description: Types that extend and augment the Java Collections Framework. URL: http://commons.apache.org/collections/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1 (compile)

    Citations utilities
    Description: A module to handle citations from CiteXplore. URL: http://intenz.sf.net/biobabel/biobabel-citations Project License: No project license is defined for this project.

    • com.sun.xml.ws:jaxws-tools:jar:2.1.4 (compile)

      JAX-WS (JSR-224) Reference Implementation Tools
      Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net/ Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

      • com.sun.xml.ws:jaxws-rt:jar:2.1.4 (compile)

        JAX-WS (JSR-224) Reference Implementation
        Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net/ Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

        • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile)

          jaxb-impl
          Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

          • javax.xml.bind:jaxb-api:jar:2.1 (compile)

            jaxb-api
            Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

        • com.sun.xml.stream.buffer:streambuffer:jar:0.7 (compile)

          streambuffer
          Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

          • org.jvnet.staxex:stax-ex:jar:1.2 (compile)

            Extended StAX API
            Description: Extensions to JSR-173 StAX API. URL: https://stax-ex.dev.java.net/ Project License: Common Development And Distribution License (CDDL) Version 1.0

          • javax.activation:activation:jar:1.1 (compile)

            JavaBeans Activation Framework (JAF)

            Description: JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s). URL: http://java.sun.com/products/javabeans/jaf/index.jsp Project License: Common Development and Distribution License (CDDL) v1.0

        • com.sun.xml.stream:sjsxp:jar:1.0.1 (compile)

          sjsxp
          Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

        • org.jvnet.staxex:stax-ex:jar:1.2 (compile)

          Extended StAX API
          Description: Extensions to JSR-173 StAX API. URL: https://stax-ex.dev.java.net/ Project License: Common Development And Distribution License (CDDL) Version 1.0

          • javax.activation:activation:jar:1.1 (compile)

            JavaBeans Activation Framework (JAF)

            Description: JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s). URL: http://java.sun.com/products/javabeans/jaf/index.jsp Project License: Common Development and Distribution License (CDDL) v1.0

        • com.sun.org.apache.xml.internal:resolver:jar:20050927 (compile)

          resolver
          Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

        • org.jvnet:mimepull:jar:1.2 (compile)

          MIME streaming extension
          Description: Provides a streaming API to access attachments parts in a MIME message. Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

      • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile)

        jaxb-xjc
        Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

        • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile)

          jaxb-impl
          Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

    • javax.xml.bind:jaxb-api:jar:2.1 (compile)

      jaxb-api
      Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

      • javax.xml.stream:stax-api:jar:1.0-2 (compile)

        Streaming API for XML
        Description: StAX is a standard XML processing API that allows you to stream XML data from and to your application. Project License: GNU General Public LibraryCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

      • javax.activation:activation:jar:1.1 (compile)

        JavaBeans Activation Framework (JAF)

        Description: JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s). URL: http://java.sun.com/products/javabeans/jaf/index.jsp Project License: Common Development and Distribution License (CDDL) v1.0

    • javax.xml.ws:jaxws-api:jar:2.1-1 (compile)

      JAX-WS API
      Description: JAX-WS API URL: https://jax-ws.dev.java.net/ Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

      • javax.xml.bind:jaxb-api:jar:2.1 (compile)

        jaxb-api
        Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

      • javax.xml.soap:saaj-api:jar:1.3 (compile)

        SOAP with Attachments API Package
        Description: There is currently no description associated with this project. URL: http://java.sun.com/webservices/saaj/index.jsp Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

      • javax.annotation:jsr250-api:jar:1.0 (compile)

        JSR-250 Common Annotations for the JavaTM Platform
        Description: JSR-250 Reference Implementation by Glassfish URL: http://jcp.org/aboutJava/communityprocess/final/jsr250/index.html Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

      • javax.jws:jsr181:jar:1.0 (compile)

        Web Services Metadata for the Java Platform API
        Description: There is currently no description associated with this project. URL: http://dev2dev.bea.com/webservices/jwsm.html Project License: No project license is defined for this project.

  • log4j:log4j:jar:1.2.17 (compile)

    Apache Log4j
    Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0