compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• uk.ac.ebi.ep:mega-mapper:jar:1.0.8

  Mega mapper
  Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/mega-mapper Project License: No project license is defined for this project.

  • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile)

    Database utilities
    Description: A module with database utilities. URL: http://intenz.sf.net/biobabel/biobabel-db Project License: No project license is defined for this project.

    • org.antlr:antlr:jar:3.0.1 (compile)

      AntLR Parser Generator
      Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://antlr.org/ Project License: BSD licence

      • org.antlr:stringtemplate:jar:3.1-b1 (compile)

        StringTemplate Template Engine
        Description: StringTemplate is a java template engine (with ports for C# and Python) for generating source code, web pages, emails, or any other formatted text output. URL: http://www.stringtemplate.org Project License: BSD licence

  • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

    Core Utility Modules
    Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No project license is defined for this project.

    • commons-collections:commons-collections:jar:3.2.1 (compile)

      Commons Collections
      Description: Types that extend and augment the Java Collections Framework. URL: http://commons.apache.org/collections/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.biobabel:ebeye-client:jar:2.0.0 (compile)

    EB-Eye client
    Description: A (SOAP) web services client for the EB-Eye search engine. URL: http://intenz.sf.net/biobabel/ebeye-client Project License: No project license is defined for this project.

  • org.apache.lucene:lucene-core:jar:3.0.2 (compile)

    Lucene Core
    Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-core Project License: Apache 2

  • org.hibernate:hibernate-core:jar:3.6.8.Final (compile)

    Hibernate Core
    Description: The core functionality of Hibernate URL: http://hibernate.org/hibernate-core Project License: GNU Lesser General Public License

    • antlr:antlr:jar:2.7.6 (compile)

      AntLR
      Description: There is currently no description associated with this project. URL: http://www.antlr.org/ Project License: No project license is defined for this project.

    • dom4j:dom4j:jar:1.6.1 (compile)

      dom4j
      Description: dom4j: the flexible XML framework for Java URL: http://dom4j.org Project License: No project license is defined for this project.

    • org.hibernate:hibernate-commons-annotations:jar:3.2.0.Final (compile)

      Hibernate Commons Annotations
      Description: Common reflection code used in support of annotation processing URL: http://hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

    • org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.1.Final (compile)

      JPA 2.0 API
      Description: Hibernate definition of the Java Persistence 2.0 (JSR 317) API. URL: http://hibernate.org Project License:

    • org.slf4j:slf4j-api:jar:1.6.1 (compile)

      SLF4J API Module
      Description: The slf4j API URL: http://www.slf4j.org Project License: MIT License

  • org.hibernate:hibernate-tools:jar:3.2.4.GA (compile)

    Hibernate Tools
    Description: Forward- and reverse-engineering tools for Eclipse and Ant. URL: http://tools.hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

    • org.beanshell:bsh:jar:2.0b4 (compile)

      BeanShell
      Description: BeanShell Project License: GNU LESSER GENERAL PUBLIC LICENSE

    • freemarker:freemarker:jar:2.3.8 (compile)

      freemarker
      Description: FreeMarker is a "template engine"; a generic tool to generate text output based on templates. URL: http://freemarker.org/ Project License: BSD-style license

    • org.hibernate:jtidy:jar:r8-20060801 (compile)

      JTidy
      Description: JTidy is a Java port of HTML Tidy, a HTML syntax checker and pretty printer. Like its non-Java cousin, JTidy can be used as a tool for cleaning up malformed and faulty HTML. In addition, JTidy provides a DOM parser for real-world HTML. URL: http://jtidy.sourceforge.net Project License: Java HTML Tidy License

  • log4j:log4j:jar:1.2.17 (compile)

    Apache Log4j
    Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

  • junit:junit:jar:4.10 (test)

    JUnit
    Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

    • org.hamcrest:hamcrest-core:jar:1.1 (test)

      Hamcrest Core
      Description: There is currently no description associated with this project. Project License: BSD style

  • com.oracle:ojdbc5:jar:11.1.0.7.0 (compile)

    ojdbc5
    Description: There is currently no description associated with this project. Project License: No project license is defined for this project.

  • uk.ac.ebi.ep:ep-domain:jar:1.0.4 (compile)

    EnzymePortalDomain
    Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://enzymeportal.sf.net/ep-domain Project License: No project license is defined for this project.

  • uk.ac.ebi.ep:bioportal-adapter:jar:1.0.2 (compile)

    bioportal-adapter
    Description: The Enzyme Portal is for people who are interested in the biology of enzymes and proteins with enzymatic activity. URL: http://maven.apache.org Project License: No project license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

      Core Utility Modules
      Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No project license is defined for this project.

  • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile)

    Lucene module
    Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No project license is defined for this project.

  • org.hibernate:hibernate:jar:3.2.5.ga (compile)

    Hibernate
    Description: Relational Persistence for Java URL: http://www.hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

    • net.sf.ehcache:ehcache:jar:1.2.3 (compile)

      ehcache

      Description: ehcache is a pure Java, in-process cache with the following features: 1. Fast. 2. Simple. 3. Multiple eviction policies: LRU, LFU and FIFO. 4. Caches can be in memory or on disk. 5. Disk Stores can be persistent between VM restarts. 6. Distributed caching using multicast and RMI, with a pluggable API. 7. Cache and CacheManager listeners 8. Supports multiple Caches per CacheManager, and multiple CacheManagers per application. 9. Acts as a pluggable cache for Hibernate 3.1, 3 and 2.1. 10. Small foot print. Both in terms of size and memory requirements. 11. Minimal dependencies apart from J2SE. 12. Fully documented. See the online Documentation and the online JavaDoc. 13. Comprehensive Test Coverage. See the clover test report. 14. Available under the Apache 1.1 license. EHCache's copyright and licensing has been reviewed and approved by the Apache Software Foundation, making EHCache suitable for use in Apache projects. 15. Production tested. EHCache is used on a large and very busy eCommerce site. 16. Web caching, pull-through caches and other common caching implementations are provided in the ehcache-constructs module. URL: http://ehcache.sf.net Project License: The Apache Software License, Version 2.0

      • commons-logging:commons-logging:jar:1.0.4 (compile)

        Logging
        Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://jakarta.apache.org/commons/logging/ Project License: The Apache Software License, Version 2.0

    • javax.transaction:jta:jar:1.0.1B (compile)

      Java Transaction API
      Description: The javax.transaction package. It is appropriate for inclusion in a classpath, and may be added to a Java 2 installation. URL: http://java.sun.com/products/jta Project License: No project license is defined for this project.

    • commons-logging:commons-logging:jar:1.0.4 (compile)

      Logging
      Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://jakarta.apache.org/commons/logging/ Project License: The Apache Software License, Version 2.0

    • asm:asm-attrs:jar:1.5.3 (compile)

      asm-attrs
      Description: There is currently no description associated with this project. URL: http://asm.objectweb.org/ Project License: No project license is defined for this project.

    • dom4j:dom4j:jar:1.6.1 (compile)

      dom4j
      Description: dom4j: the flexible XML framework for Java URL: http://dom4j.org Project License: No project license is defined for this project.

    • antlr:antlr:jar:2.7.6 (compile)

      AntLR
      Description: There is currently no description associated with this project. URL: http://www.antlr.org/ Project License: No project license is defined for this project.

    • cglib:cglib:jar:2.1_3 (compile)

      cglib
      Description: There is currently no description associated with this project. URL: http://cglib.sourceforge.net/ Project License: No project license is defined for this project.

      • asm:asm:jar:1.5.3 (compile)

        asm
        Description: There is currently no description associated with this project. URL: http://asm.objectweb.org/ Project License: No project license is defined for this project.

    • asm:asm:jar:1.5.3 (compile)

      asm
      Description: There is currently no description associated with this project. URL: http://asm.objectweb.org/ Project License: No project license is defined for this project.

  • org.hibernate:hibernate-entitymanager:jar:3.3.2.GA (compile)

    Hibernate Entitity Manager
    Description: Hibernate Entitity Manager URL: http://hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

    • org.hibernate:hibernate-annotations:jar:3.3.1.GA (compile)

      Hibernate Annotations
      Description: Annotations metadata for Hibernate URL: http://annotations.hibernate.org Project License: GNU LESSER GENERAL PUBLIC LICENSE

      • org.hibernate:ejb3-persistence:jar:1.0.1.GA (compile)

        Java Persistence API
        Description: Java Persistence API URL: http://www.hibernate.org Project License: No project license is defined for this project.

      • commons-logging:commons-logging:jar:1.0.4 (compile)

        Logging
        Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://jakarta.apache.org/commons/logging/ Project License: The Apache Software License, Version 2.0

    • org.hibernate:ejb3-persistence:jar:1.0.1.GA (compile)

      Java Persistence API
      Description: Java Persistence API URL: http://www.hibernate.org Project License: No project license is defined for this project.

    • commons-logging:commons-logging:jar:1.0.4 (compile)

      Logging
      Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://jakarta.apache.org/commons/logging/ Project License: The Apache Software License, Version 2.0

    • javassist:javassist:jar:3.4.GA (compile)

      Javassist
      Description: Simple Java bytecode manipulation URL: http://www.jboss.org/products/javassist Project License: lgpl

  • javax.sql:jdbc-stdext:jar:2.0 (compile)

    JDBC 2.0 Optional Package
    Description: JDBC 2.0 Optional Package URL: http://java.sun.com/products/jdbc/index.jsp Project License: No project license is defined for this project.

  • javax.transaction:jta:jar:1.0.1B (compile)

    Java Transaction API
    Description: The javax.transaction package. It is appropriate for inclusion in a classpath, and may be added to a Java 2 installation. URL: http://java.sun.com/products/jta Project License: No project license is defined for this project.

  • javax.annotation:jsr250-api:jar:1.0 (provided)

    JSR-250 Common Annotations for the JavaTM Platform
    Description: JSR-250 Reference Implementation by Glassfish URL: http://jcp.org/aboutJava/communityprocess/final/jsr250/index.html Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0