Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupIdArtifactIdVersionTypeLicense
com.oracleojdbc511.1.0.7.0jar-
javax.sqljdbc-stdext2.0jar-
javax.transactionjta1.0.1Bjar-
log4jlog4j1.2.17jarThe Apache Software License, Version 2.0
org.apache.lucenelucene-core3.0.2jarApache 2
org.hibernatehibernate3.2.5.gajarGNU LESSER GENERAL PUBLIC LICENSE
org.hibernatehibernate-core3.6.8.FinaljarGNU Lesser General Public License
org.hibernatehibernate-entitymanager3.3.2.GAjarGNU LESSER GENERAL PUBLIC LICENSE
org.hibernatehibernate-tools3.2.4.GAjarGNU LESSER GENERAL PUBLIC LICENSE
uk.ac.ebi.biobabelbiobabel-core0.9.0jar-
uk.ac.ebi.biobabelbiobabel-db1.3.7jar-
uk.ac.ebi.biobabelbiobabel-lucene1.0.6jar-
uk.ac.ebi.biobabelebeye-client2.0.0jar-
uk.ac.ebi.epbioportal-adapter1.0.2jar-
uk.ac.ebi.epep-domain1.0.4jar-

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupIdArtifactIdVersionTypeLicense
junitjunit4.10jarCommon Public License Version 1.0

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

GroupIdArtifactIdVersionTypeLicense
javax.annotationjsr250-api1.0jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupIdArtifactIdVersionTypeLicense
antlrantlr2.7.6jar-
asmasm1.5.3jar-
asmasm-attrs1.5.3jar-
cglibcglib2.1_3jar-
commons-collectionscommons-collections3.2.1jarThe Apache Software License, Version 2.0
commons-loggingcommons-logging1.0.4jar/LICENSE.txt
dom4jdom4j1.6.1jar-
freemarkerfreemarker2.3.8jarBSD-style license
javassistjavassist3.4.GAjarlgpl
net.sf.ehcacheehcache1.2.3jarThe Apache Software License, Version 2.0
org.antlrantlr3.0.1jarBSD licence
org.antlrstringtemplate3.1-b1jarBSD licence
org.beanshellbsh2.0b4jarGNU LESSER GENERAL PUBLIC LICENSE
org.hibernateejb3-persistence1.0.1.GAjar-
org.hibernatehibernate-annotations3.3.1.GAjarGNU LESSER GENERAL PUBLIC LICENSE
org.hibernatehibernate-commons-annotations3.2.0.FinaljarGNU LESSER GENERAL PUBLIC LICENSE
org.hibernatejtidyr8-20060801jarJava HTML Tidy License
org.hibernate.javax.persistencehibernate-jpa-2.0-api1.0.1.Finaljarlicense.txt
org.slf4jslf4j-api1.6.1jarMIT License

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupIdArtifactIdVersionTypeLicense
org.hamcresthamcrest-core1.1jarBSD style

Project Dependency Graph

Dependency Tree

  • uk.ac.ebi.ep:mega-mapper:jar:1.0.8 Information
    • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile) Information
      • org.antlr:antlr:jar:3.0.1 (compile) Information
        • org.antlr:stringtemplate:jar:3.1-b1 (compile) Information
    • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile) Information
    • uk.ac.ebi.biobabel:ebeye-client:jar:2.0.0 (compile) Information
    • org.apache.lucene:lucene-core:jar:3.0.2 (compile) Information
    • org.hibernate:hibernate-core:jar:3.6.8.Final (compile) Information
      • antlr:antlr:jar:2.7.6 (compile) Information
      • dom4j:dom4j:jar:1.6.1 (compile) Information
      • org.hibernate:hibernate-commons-annotations:jar:3.2.0.Final (compile) Information
      • org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.1.Final (compile) Information
      • org.slf4j:slf4j-api:jar:1.6.1 (compile) Information
    • org.hibernate:hibernate-tools:jar:3.2.4.GA (compile) Information
      • org.beanshell:bsh:jar:2.0b4 (compile) Information
      • freemarker:freemarker:jar:2.3.8 (compile) Information
      • org.hibernate:jtidy:jar:r8-20060801 (compile) Information
    • log4j:log4j:jar:1.2.17 (compile) Information
    • junit:junit:jar:4.10 (test) Information
      • org.hamcrest:hamcrest-core:jar:1.1 (test) Information
    • com.oracle:ojdbc5:jar:11.1.0.7.0 (compile) Information
    • uk.ac.ebi.ep:ep-domain:jar:1.0.4 (compile) Information
    • uk.ac.ebi.ep:bioportal-adapter:jar:1.0.2 (compile) Information
      • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile) Information
    • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile) Information
    • org.hibernate:hibernate:jar:3.2.5.ga (compile) Information
      • net.sf.ehcache:ehcache:jar:1.2.3 (compile) Information
      • javax.transaction:jta:jar:1.0.1B (compile) Information
      • commons-logging:commons-logging:jar:1.0.4 (compile) Information
      • asm:asm-attrs:jar:1.5.3 (compile) Information
      • dom4j:dom4j:jar:1.6.1 (compile) Information
      • antlr:antlr:jar:2.7.6 (compile) Information
      • cglib:cglib:jar:2.1_3 (compile) Information
        • asm:asm:jar:1.5.3 (compile) Information
      • asm:asm:jar:1.5.3 (compile) Information
    • org.hibernate:hibernate-entitymanager:jar:3.3.2.GA (compile) Information
    • javax.sql:jdbc-stdext:jar:2.0 (compile) Information
    • javax.transaction:jta:jar:1.0.1B (compile) Information
    • javax.annotation:jsr250-api:jar:1.0 (provided) Information

Licenses

Unamed: JPA 2.0 API

BSD style: Hamcrest Core

Apache 2: Lucene Core

GNU LESSER GENERAL PUBLIC LICENSE: BeanShell, Hibernate, Hibernate Annotations, Hibernate Commons Annotations, Hibernate Entitity Manager, Hibernate Tools

Unknown: AntLR, Core Utility Modules, Database utilities, EB-Eye client, EnzymePortalDomain, JDBC 2.0 Optional Package, Java Persistence API, Java Transaction API, Lucene module, Mega mapper, asm, asm-attrs, bioportal-adapter, cglib, dom4j, ojdbc5

BSD licence: AntLR Parser Generator, StringTemplate Template Engine

BSD-style license: freemarker

COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0: JSR-250 Common Annotations for the JavaTM Platform

The Apache Software License, Version 2.0: Apache Log4j, Commons Collections, Logging, ehcache

GNU Lesser General Public License: Hibernate Core

lgpl: Javassist

Java HTML Tidy License: JTidy

Common Public License Version 1.0: JUnit

MIT License: SLF4J API Module

Dependency File Details

FilenameSizeEntriesClassesPackagesJDK RevDebugSealed
antlr-2.7.6.jar433.04 kB226224121.2debug-
asm-1.5.3.jar25.74 kB191411.2release-
asm-attrs-1.5.3.jar16.36 kB221611.2release-
cglib-2.1_3.jar275.72 kB24322881.2debug-
ojdbc5-11.1.0.7.0.jar1.80 MB788713291.5debugsealed
jsr250-api-1.0.jar5.71 kB161121.5debug-
jdbc-stdext-2.0.jar6.57 kB171411.1debug-
jta-1.0.1B.jar8.52 kB221721.2debug-
junit-4.10.jar247.23 kB290252311.5debug-
log4j-1.2.17.jar478.40 kB353314211.4debug-
lucene-core-3.0.2.jar1,008.75 kB730709151.5debug-
hibernate-3.2.5.ga.jar2.15 MB1,4281,344781.4debug-
hibernate-core-3.6.8.Final.jar2.97 MB2,1161,996991.5debug-
hibernate-entitymanager-3.3.2.GA.jar115.98 kB927781.5debug-
hibernate-tools-3.2.4.GA.jar356.44 kB274174141.4debug-
biobabel-core-0.9.0.jar40.60 kB402441.5debug-
biobabel-db-1.3.7.jar25.19 kB281211.5debug-
biobabel-lucene-1.0.6.jar6.49 kB15311.5debug-
ebeye-client-2.0.0.jar53.68 kB776421.5debug-
bioportal-adapter-1.0.2.jar8.83 kB19611.5debug-
ep-domain-1.0.4.jar117.52 kB133102101.5debug-
TotalSizeEntriesClassesPackagesJDK RevDebugSealed
2110.08 MB6,9486,3143411.5191
compile: 19compile: 9.84 MBcompile: 6,642compile: 6,051compile: 308-compile: 17compile: 1
test: 1test: 247.23 kBtest: 290test: 252test: 31-test: 1-
provided: 1provided: 5.71 kBprovided: 16provided: 11provided: 2-provided: 1-

Dependency Repository Locations

Repo IDURLReleaseSnapshotBlacklisted
biobabel-repo${biobabel.maven.repo.url}YesYesYes
apache-snapshot-repositoryhttp://people.apache.org/repo/m2-snapshot-repositoryYesYes-
apache.snapshotshttp://people.apache.org/repo/m2-snapshot-repository-Yes-
ibiblio.orghttp://repo1.maven.org/maven2Yes--
ebi-repohttp://www.ebi.ac.uk/~maven/m2repoYes--
hibernate-supporthttp://repo1.maven.org/maven2/YesYes-
codehaus-repositoryhttp://repository.codehaus.orgYesYes-
maven2-repository.dev.java.nethttp://download.java.net/maven/2/YesYes-
dev.java.net.2http://download.java.net/maven/2/YesYes-
ebi-repo-snapshotshttp://www.ebi.ac.uk/~maven/m2repo_snapshots-Yes-
ibibliohttp://mirrors.ibiblio.org/pub/mirrors/maven2/YesYes-
maven-repohttp://repo1.maven.org/maven2YesYes-

Repository locations for each of the Dependencies.

Artifactapache-snapshot-repositoryapache.snapshotsibiblio.orgebi-repohibernate-supportcodehaus-repositorymaven2-repository.dev.java.netdev.java.net.2ebi-repo-snapshotsibibliomaven-repo
antlr:antlr:jar:2.7.6--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
asm:asm:jar:1.5.3--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
asm:asm-attrs:jar:1.5.3--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
cglib:cglib:jar:2.1_3--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
com.oracle:ojdbc5:jar:11.1.0.7.0---Found at http://www.ebi.ac.uk/~maven/m2repo-------
commons-collections:commons-collections:jar:3.2.1--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
commons-logging:commons-logging:jar:1.0.4--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
dom4j:dom4j:jar:1.6.1--Found at http://repo1.maven.org/maven2Found at http://www.ebi.ac.uk/~maven/m2repoFound at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
freemarker:freemarker:jar:2.3.8--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
javassist:javassist:jar:3.4.GA--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
javax.annotation:jsr250-api:jar:1.0--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/-Found at http://download.java.net/maven/2/Found at http://download.java.net/maven/2/-Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
javax.sql:jdbc-stdext:jar:2.0---Found at http://www.ebi.ac.uk/~maven/m2repo--Found at http://download.java.net/maven/2/Found at http://download.java.net/maven/2/---
javax.transaction:jta:jar:1.0.1B---Found at http://www.ebi.ac.uk/~maven/m2repo--Found at http://download.java.net/maven/2/Found at http://download.java.net/maven/2/---
junit:junit:jar:4.10--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
log4j:log4j:jar:1.2.17--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
net.sf.ehcache:ehcache:jar:1.2.3--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.antlr:antlr:jar:3.0.1--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.antlr:stringtemplate:jar:3.1-b1--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.apache.lucene:lucene-core:jar:3.0.2--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.beanshell:bsh:jar:2.0b4--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hamcrest:hamcrest-core:jar:1.1--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:ejb3-persistence:jar:1.0.1.GA--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:hibernate:jar:3.2.5.ga--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:hibernate-annotations:jar:3.3.1.GA--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:hibernate-commons-annotations:jar:3.2.0.Final--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:hibernate-core:jar:3.6.8.Final--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:hibernate-entitymanager:jar:3.3.2.GA--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:hibernate-tools:jar:3.2.4.GA--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate:jtidy:jar:r8-20060801--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.1.Final--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
org.slf4j:slf4j-api:jar:1.6.1--Found at http://repo1.maven.org/maven2-Found at http://repo1.maven.org/maven2/----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo1.maven.org/maven2
uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0---Found at http://www.ebi.ac.uk/~maven/m2repo-------
uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7---Found at http://www.ebi.ac.uk/~maven/m2repo-------
uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6---Found at http://www.ebi.ac.uk/~maven/m2repo-------
uk.ac.ebi.biobabel:ebeye-client:jar:2.0.0---Found at http://www.ebi.ac.uk/~maven/m2repo-------
uk.ac.ebi.ep:bioportal-adapter:jar:1.0.2---Found at http://www.ebi.ac.uk/~maven/m2repo-------
uk.ac.ebi.ep:ep-domain:jar:1.0.4---Found at http://www.ebi.ac.uk/~maven/m2repo-------
Totalapache-snapshot-repositoryapache.snapshotsibiblio.orgebi-repohibernate-supportcodehaus-repositorymaven2-repository.dev.java.netdev.java.net.2ebi-repo-snapshotsibibliomaven-repo
37 (compile: 34, test: 2, provided: 1)0028102803302828