|
Class Summary |
| ChebiCompounds |
|
| CliOptionsParser |
A parser of the command line options for the mega-mapper parsers. |
| Compounds |
|
| CompoundsDAOImpl |
This class is to retrieve compounds from chebi database and write them to the mega mapper |
| CustomEntity |
the aim of this class if to provide a transfer object ( place holder) for the entities that will be returned from the hibernate query |
| DatabaseResources |
|
| EbeyeParser |
Deprecated. use EbeyeSaxParser instead, this one requires lots of memory
for big files. |
| EbeyeSaxParser |
Parser for EB-Eye XML files to populate a mega-map. |
| HibernateUtil |
Hibernate Utility class with a convenient method to get Session Factory
object. |
| Reference |
|
| Uniprot2DiseaseParser |
Class to parse the HTML
file
containing a table of equivalences from UniProt accessions to OMIM IDs and
MeSH terms. |
| UniprotSaxParser |
UniProt XML parser which takes into account only primary accessions,
entry names (IDs), organisms, EC numbers and PDB codes, and indexes/stores
them in a mega-map. |