uk.ac.ebi.ep.mm
Enum MmDatabase

java.lang.Object
  java.lang.Enum<MmDatabase>
      uk.ac.ebi.ep.mm.MmDatabase

All Implemented Interfaces:

Serializable, Comparable<MmDatabase>

public enum MmDatabase
extends Enum<MmDatabase>

Databases included in the mega-map (or encountered in some way during the process of building it).

Author:

rafa

Enum Constant Summary

Agricola

ArrayExpressAtlas

Beilstein

BioModels

BRENDA

CAS

ChEBI

ChEMBL

ChEMBL_Activity

ChEMBL_Target

Chinese_Abstracts

COMe

DrugBank

EC

EFO

Gmelin

Golm

HMDB

IEDB

IntAct

IntEnz

KEGG_COMPOUND

KEGG_DRUG

KEGG_GLYCAN

Linnean

LIPID_MAPS_class

LIPID_MAPS_instance

MeSH

MetaCyc

MolBase

NMRShiftDB

OMIM

Patent

PDB

PDBeChem

PubChem

PubMed

Reactome

Reaxys

RESID

Rhea

SABIO_RK

UM_BBD_compID

UniProt

WebElements

Wikipedia

Method Summary

String	getAccessionField()
String	getIdField()
String	getNameField()
static MmDatabase	parse(String s) Parses a string into a MmDatabase value.
static MmDatabase	valueOf(String name) Returns the enum constant of this type with the specified name.
static MmDatabase[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

Agricola

public static final MmDatabase Agricola

ArrayExpressAtlas

public static final MmDatabase ArrayExpressAtlas

BRENDA

public static final MmDatabase BRENDA

Beilstein

public static final MmDatabase Beilstein

BioModels

public static final MmDatabase BioModels

CAS

public static final MmDatabase CAS

COMe

public static final MmDatabase COMe

ChEBI

public static final MmDatabase ChEBI

ChEMBL

public static final MmDatabase ChEMBL

ChEMBL_Activity

public static final MmDatabase ChEMBL_Activity

ChEMBL_Target

public static final MmDatabase ChEMBL_Target

Chinese_Abstracts

public static final MmDatabase Chinese_Abstracts

DrugBank

public static final MmDatabase DrugBank

EC

public static final MmDatabase EC

EFO

public static final MmDatabase EFO

Gmelin

public static final MmDatabase Gmelin

Golm

public static final MmDatabase Golm

HMDB

public static final MmDatabase HMDB

IEDB

public static final MmDatabase IEDB

IntAct

public static final MmDatabase IntAct

IntEnz

public static final MmDatabase IntEnz

KEGG_COMPOUND

public static final MmDatabase KEGG_COMPOUND

KEGG_DRUG

public static final MmDatabase KEGG_DRUG

KEGG_GLYCAN

public static final MmDatabase KEGG_GLYCAN

Linnean

public static final MmDatabase Linnean

LIPID_MAPS_class

public static final MmDatabase LIPID_MAPS_class

LIPID_MAPS_instance

public static final MmDatabase LIPID_MAPS_instance

MeSH

public static final MmDatabase MeSH

MetaCyc

public static final MmDatabase MetaCyc

MolBase

public static final MmDatabase MolBase

NMRShiftDB

public static final MmDatabase NMRShiftDB

OMIM

public static final MmDatabase OMIM

PDB

public static final MmDatabase PDB

PDBeChem

public static final MmDatabase PDBeChem

Patent

public static final MmDatabase Patent

PubChem

public static final MmDatabase PubChem

PubMed

public static final MmDatabase PubMed

RESID

public static final MmDatabase RESID

Reactome

public static final MmDatabase Reactome

Reaxys

public static final MmDatabase Reaxys

Rhea

public static final MmDatabase Rhea

SABIO_RK

public static final MmDatabase SABIO_RK

UM_BBD_compID

public static final MmDatabase UM_BBD_compID

UniProt

public static final MmDatabase UniProt

WebElements

public static final MmDatabase WebElements

Wikipedia

public static final MmDatabase Wikipedia

Method Detail

values

public static MmDatabase[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (MmDatabase c : MmDatabase.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static MmDatabase valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getIdField

public String getIdField()

getNameField

public String getNameField()

getAccessionField

public String getAccessionField()

parse

public static MmDatabase parse(String s)

Parses a string into a MmDatabase value. This method is more flexible than valueOf, accepting database synonyms (ex. 'TrEMBL' will be parsed as UniProt) and ignoring letter case.

Parameters:

s -

Returns:

a MmDatabase, or null if no match is found.