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| Packages that use MmDatabase | |
|---|---|
| uk.ac.ebi.ep.mm | |
| Uses of MmDatabase in uk.ac.ebi.ep.mm |
|---|
| Methods in uk.ac.ebi.ep.mm that return MmDatabase | |
|---|---|
static MmDatabase |
MmDatabase.parse(String s)
Parses a string into a MmDatabase value. |
static MmDatabase |
MmDatabase.valueOf(String name)
Returns the enum constant of this type with the specified name. |
static MmDatabase[] |
MmDatabase.values()
Returns an array containing the constants of this enum type, in the order they are declared. |
| Methods in uk.ac.ebi.ep.mm with parameters of type MmDatabase | |
|---|---|
static Relationship |
Relationship.between(MmDatabase from,
MmDatabase to)
Gets the usual relationship between two databases. |
List<String> |
MegaLuceneMapper.getAllUniProtAccessions(MmDatabase database)
|
List<String> |
MegaJdbcMapper.getAllUniProtAccessions(MmDatabase database)
to retrieve all accessions for the given database |
List<String> |
MegaMapper.getAllUniProtAccessions(MmDatabase database)
|
List<String> |
MegaDbMapper.getAllUniProtAccessions(MmDatabase database)
|
List<XRef> |
MegaLuceneMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
|
List<XRef> |
MegaLuceneMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
|
List<XRef> |
MegaJdbcMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDbs)
retrieves a List of XRef with database name as ChEMBL. |
List<XRef> |
MegaJdbcMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDbs)
retrieves a List of XRef with database name as ChEMBL. |
List<XRef> |
MegaMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
Retrieves cross references from the mega-map for a given accession where database name is CheMBL. |
List<XRef> |
MegaMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
Retrieves cross references from the mega-map for a given accession where database name is CheMBL. |
List<XRef> |
MegaDbMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
|
List<XRef> |
MegaDbMapper.getChMBLXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
|
Map<?,?> |
MegaLuceneMapper.getCompounds(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<?,?> |
MegaLuceneMapper.getCompounds(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getCompounds(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getCompounds(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<?,?> |
MegaMapper.getCompounds(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<?,?> |
MegaMapper.getCompounds(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<?,?> |
MegaDbMapper.getCompounds(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<?,?> |
MegaDbMapper.getCompounds(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getCompoundsNew(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getCompoundsNew(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<String,String> |
MegaLuceneMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaLuceneMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaDbMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaDbMapper.getDisease(MmDatabase db,
String accessions,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getDiseaseNew(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Map<String,String> |
MegaJdbcMapper.getDiseaseNew(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Entry |
MegaLuceneMapper.getEntryForAccession(MmDatabase db,
String accession)
|
Entry |
MegaJdbcMapper.getEntryForAccession(MmDatabase db,
String accession)
Retrieves an entry for a given accession. |
Entry |
MegaMapper.getEntryForAccession(MmDatabase db,
String accession)
Retrieves an entry for a given accession. |
Entry |
MegaDbMapper.getEntryForAccession(MmDatabase db,
String accession)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(Collection<Entry> entries,
MmDatabase... db)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(Collection<Entry> entries,
MmDatabase... dbs)
|
Collection<XRef> |
MegaMapper.getXrefs(Collection<Entry> entries,
MmDatabase... db)
Retrieves cross references from the mega-map for several entries. |
Collection<XRef> |
MegaDbMapper.getXrefs(Collection<Entry> entries,
MmDatabase... db)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(Entry entry,
MmDatabase... db)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(Entry entry,
MmDatabase... dbs)
|
Collection<XRef> |
MegaMapper.getXrefs(Entry entry,
MmDatabase... db)
Retrieves cross references from the mega-map. |
Collection<XRef> |
MegaDbMapper.getXrefs(Entry entry,
MmDatabase... dbs)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(MmDatabase db,
String accession)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(MmDatabase db,
String accession)
|
Collection<XRef> |
MegaMapper.getXrefs(MmDatabase db,
String accession)
Retrieves cross references from the mega-map for a given accession (not ID) regardless of the referencing/referenced database.. |
Collection<XRef> |
MegaDbMapper.getXrefs(MmDatabase db,
String accession)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
Retrieves cross references from the mega-map for a given text which matches an entry ID, who is related to the given databases. This method is provided in order to search for UniProt ID prefixes (ex. |
Collection<XRef> |
MegaMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
Retrieves cross references from the mega-map for a given text which matches an entry ID, who is related to the given databases. This method is provided in order to search for UniProt ID prefixes (ex. |
Collection<XRef> |
MegaDbMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaDbMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
Relationship relationship)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
Relationship rel)
|
Collection<XRef> |
MegaMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
Relationship relationship)
Retrieves cross references from the mega-map for a given text which matches an entry ID, who has a given relationship (if any). This method is provided in order to search for UniProt ID prefixes (ex. |
Collection<XRef> |
MegaDbMapper.getXrefs(MmDatabase db,
String idFragment,
MegaMapper.Constraint constraint,
Relationship relationship)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
|
Collection<XRef> |
MegaLuceneMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDbs)
|
Collection<XRef> |
MegaMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
Retrieves cross references from the mega-map for a given accession (not ID) to/from the given database(s). |
Collection<XRef> |
MegaMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDb)
Retrieves cross references from the mega-map for a given accession (not ID) to/from the given database(s). |
Collection<XRef> |
MegaDbMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDbs)
Retrieves cross references from the mega-map for a given accession (not ID) to/from the given database(s). |
Collection<XRef> |
MegaDbMapper.getXrefs(MmDatabase db,
String accession,
MmDatabase... xDbs)
Retrieves cross references from the mega-map for a given accession (not ID) to/from the given database(s). |
Collection<XRef> |
MegaLuceneMapper.getXrefs(MmDatabase db,
String accession,
Relationship relationship)
|
Collection<XRef> |
MegaJdbcMapper.getXrefs(MmDatabase db,
String accession,
Relationship relationship)
|
Collection<XRef> |
MegaMapper.getXrefs(MmDatabase db,
String accession,
Relationship relationship)
Retrieves cross references from the mega-map for a given accession (not ID) given a concrete relationship. |
Collection<XRef> |
MegaDbMapper.getXrefs(MmDatabase db,
String accession,
Relationship relationship)
|
int |
MegaLuceneMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDb)
|
int |
MegaLuceneMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDb)
|
int |
MegaJdbcMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDbs)
retrieves the total number of Xrefs found for a given accession. |
int |
MegaJdbcMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDbs)
retrieves the total number of Xrefs found for a given accession. |
int |
MegaMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDb)
retrieves the total number of Xrefs found for a given accession. |
int |
MegaMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDb)
retrieves the total number of Xrefs found for a given accession. |
int |
MegaDbMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDb)
|
int |
MegaDbMapper.getXrefsSize(MmDatabase db,
String accession,
MmDatabase... xDb)
|
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