Uses of Class
uk.ac.ebi.ep.mm.XRef

Packages that use XRef

uk.ac.ebi.ep.mm
uk.ac.ebi.ep.mm.app

Uses of XRef in uk.ac.ebi.ep.mm

Methods in uk.ac.ebi.ep.mm that return types with arguments of type XRef

List<XRef>	MegaLuceneMapper.getChMBLXrefs(MmDatabase db, String accession, MmDatabase... xDb)
List<XRef>	MegaJdbcMapper.getChMBLXrefs(MmDatabase db, String accession, MmDatabase... xDbs) retrieves a List of XRef with database name as ChEMBL.
List<XRef>	MegaMapper.getChMBLXrefs(MmDatabase db, String accession, MmDatabase... xDb) Retrieves cross references from the mega-map for a given accession where database name is CheMBL.
List<XRef>	MegaDbMapper.getChMBLXrefs(MmDatabase db, String accession, MmDatabase... xDb)
Collection<XRef>	MegaLuceneMapper.getXrefs(Collection<Entry> entries, MmDatabase... db)
Collection<XRef>	MegaJdbcMapper.getXrefs(Collection<Entry> entries, MmDatabase... dbs)
Collection<XRef>	MegaMapper.getXrefs(Collection<Entry> entries, MmDatabase... db) Retrieves cross references from the mega-map for several entries.
Collection<XRef>	MegaDbMapper.getXrefs(Collection<Entry> entries, MmDatabase... db)
Collection<XRef>	MegaLuceneMapper.getXrefs(Entry entry)
Collection<XRef>	MegaJdbcMapper.getXrefs(Entry entry)
Collection<XRef>	MegaMapper.getXrefs(Entry entry) Retrieves cross references from the mega-map regardless of the referencing/referenced database.
Collection<XRef>	MegaDbMapper.getXrefs(Entry entry)
Collection<XRef>	MegaLuceneMapper.getXrefs(Entry entry, MmDatabase... db)
Collection<XRef>	MegaJdbcMapper.getXrefs(Entry entry, MmDatabase... dbs)
Collection<XRef>	MegaMapper.getXrefs(Entry entry, MmDatabase... db) Retrieves cross references from the mega-map.
Collection<XRef>	MegaDbMapper.getXrefs(Entry entry, MmDatabase... dbs)
Collection<XRef>	MegaLuceneMapper.getXrefs(MmDatabase db, String accession)
Collection<XRef>	MegaJdbcMapper.getXrefs(MmDatabase db, String accession)
Collection<XRef>	MegaMapper.getXrefs(MmDatabase db, String accession) Retrieves cross references from the mega-map for a given accession (not ID) regardless of the referencing/referenced database..
Collection<XRef>	MegaDbMapper.getXrefs(MmDatabase db, String accession)
Collection<XRef>	MegaLuceneMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, MmDatabase... xDbs)
Collection<XRef>	MegaJdbcMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, MmDatabase... xDbs)
Collection<XRef>	MegaMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, MmDatabase... xDbs) Retrieves cross references from the mega-map for a given text which matches an entry ID, who is related to the given databases. This method is provided in order to search for UniProt ID prefixes (ex.
Collection<XRef>	MegaDbMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, MmDatabase... xDbs)
Collection<XRef>	MegaLuceneMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, Relationship relationship)
Collection<XRef>	MegaJdbcMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, Relationship rel)
Collection<XRef>	MegaMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, Relationship relationship) Retrieves cross references from the mega-map for a given text which matches an entry ID, who has a given relationship (if any). This method is provided in order to search for UniProt ID prefixes (ex.
Collection<XRef>	MegaDbMapper.getXrefs(MmDatabase db, String idFragment, MegaMapper.Constraint constraint, Relationship relationship)
Collection<XRef>	MegaLuceneMapper.getXrefs(MmDatabase db, String accession, MmDatabase... xDb)
Collection<XRef>	MegaJdbcMapper.getXrefs(MmDatabase db, String accession, MmDatabase... xDbs)
Collection<XRef>	MegaMapper.getXrefs(MmDatabase db, String accession, MmDatabase... xDb) Retrieves cross references from the mega-map for a given accession (not ID) to/from the given database(s).
Collection<XRef>	MegaDbMapper.getXrefs(MmDatabase db, String accession, MmDatabase... xDbs) Retrieves cross references from the mega-map for a given accession (not ID) to/from the given database(s).
Collection<XRef>	MegaLuceneMapper.getXrefs(MmDatabase db, String accession, Relationship relationship)
Collection<XRef>	MegaJdbcMapper.getXrefs(MmDatabase db, String accession, Relationship relationship)
Collection<XRef>	MegaMapper.getXrefs(MmDatabase db, String accession, Relationship relationship) Retrieves cross references from the mega-map for a given accession (not ID) given a concrete relationship.
Collection<XRef>	MegaDbMapper.getXrefs(MmDatabase db, String accession, Relationship relationship)

Methods in uk.ac.ebi.ep.mm with parameters of type XRef

void	MegaLuceneMapper.writeXref(XRef relationship) Writes one cross-reference to the mega-map.
void	MegaJdbcMapper.writeXref(XRef xref) Writes one cross-reference to the mega-map.
void	MegaMapper.writeXref(XRef xref) Writes one cross-reference to the mega-map.
void	MegaDbMapper.writeXref(XRef xref)

Method parameters in uk.ac.ebi.ep.mm with type arguments of type XRef

void	MegaLuceneMapper.write(Collection<Entry> entries, Collection<XRef> rels)
void	MegaJdbcMapper.write(Collection<Entry> entries, Collection<XRef> xrefs)
void	MegaMapper.write(Collection<Entry> entries, Collection<XRef> xrefs) Writes entries and relationships to the mega-map.
void	MegaDbMapper.write(Collection<Entry> entries, Collection<XRef> xrefs)
void	MegaLuceneMapper.writeXrefs(Collection<XRef> xrefs)
void	MegaJdbcMapper.writeXrefs(Collection<XRef> xrefs)
void	MegaMapper.writeXrefs(Collection<XRef> xrefs)
void	MegaDbMapper.writeXrefs(Collection<XRef> xrefs)

Uses of XRef in uk.ac.ebi.ep.mm.app

Methods in uk.ac.ebi.ep.mm.app that return XRef

XRef	CompoundsDAOImpl.computeXref(Entry chebiEntry, Entry uniprotEntry, String location_in_ref)

Methods in uk.ac.ebi.ep.mm.app with parameters of type XRef

void	DatabaseResources.writeXref(XRef ref)

Method parameters in uk.ac.ebi.ep.mm.app with type arguments of type XRef

void	DatabaseResources.writeXrefs(Collection<XRef> xRefs)